SNPMiner Trials by Shray Alag


SNPMiner SNPMiner Trials (Home Page)


Report for Mutation N171K

Developed by Shray Alag, 2020.
SNP Clinical Trial Gene

There is one clinical trial.

Clinical Trials


1 A Single-Center, Placebo-Controlled, Rising Dose to Tolerance and Safety Study of TD101, an siRNA Designed for Treatment of Pachyonychia Congenita

Pachyonychia congenita (PC) is a rare, autosomal dominant keratin disorder affecting the nails, skin, oral mucosae, larynx, hair and teeth. Pathogenic mutations in keratin K6a, K6b, K16 or K17 act via a dominant negative mechanism, leading to manifestations of the disease. The most disabling PC symptom is a painful plantar blistering and keratoderma that requires use of ambulation devices in more than 50 percent of patients. Despite our understanding of the molecular basis of PC, current treatment is limited to mechanical removal of the thick calluses, non-specific topical keratolytics, and oral retinoids, none of which alleviates blistering or plantar pain satisfactorily. A public charity, PC Project, has been founded to support the development of treatments for PC (www.pachyonychia.org). In collaboration with this charity, a small company, TransDerm, Inc., has developed a small interfering RNA (siRNA) that specifically targets a mutation in one of the PC keratins, K6a. As this siRNA targets a single nucleotide mutation, it will only be effective against PC subjects harboring this specific mutation. There are currently only six known patients who carry this mutation in the International Pachyonychia Congenita Research Registry, but three of these patients live in Salt Lake City (a mother and two of her children). We propose to perform a Phase Ib clinical trial to test the safety and tolerability of TD101 in PC patients carrying an N171K mutation. We will complete treatment of the adult patient prior to recruitment of the minors.

NCT00716014 Pachyonychia Congenita Drug: TD101 Drug: Normal saline (placebo)
MeSH:Pachyonychia Congenita Nails, Malformed
HPO:Abnormality of the nail

We propose to perform a Phase Ib clinical trial to test the safety and tolerability of TD101 in PC patients carrying an N171K mutation. --- N171K ---

Inclusion Criteria: - A positive genetic identification of the N171K mutation in the keratin 6a gene from a CLIA certified laboratory; - Witnessed, signed informed consent approved by Institutional Review Board/Ethics Committee; - A signed Health Information Portability and Accountability Act (HIPAA) authorization form which permits the use and disclosure of patient's individually identifiable health information for those enrolled in the United States of America; - Male or female subjects of any race 10 years of age and older; - Complete physical examination and medical history indicating no abnormalities that will interfere with study objectives; - Normal or not clinically significant baseline laboratory tests, including hemogram, ANA, serum chemistry panel, urinalysis, C3a, Bb, and APTT,PT; - Negative pregnancy test (females only). --- N171K ---

Primary Outcomes

Measure: Determine safety/toxicity of TD101

Time: 18 weeks, followed by 3-month wash out period

Secondary Outcomes

Measure: Determine efficacy of TD101

Time: 18 weeks, followed by 3-month wash out period


HPO Nodes


HP:0001597: Abnormality of the nail
Genes 672
PPM1D NHP2 KRT14 PIGY CTBP1 LRP4 LIMK1 KLHL24 EDARADD MPLKIP TSC2 CDIN1 IL17F EDAR WDR35 ARHGAP31 INPPL1 TERT AFF4 ARID1B PTEN KRT81 IL36RN STK11 TP63 HEPHL1 LAMA3 GPC3 KRT1 PEX7 COL7A1 ELN CTSK SOST MBTPS2 FOXN1 LPAR6 PORCN KRT5 ATP6V1B2 DYNC2LI1 PKP1 WRAP53 FZD6 STAT3 KRT14 TSC1 NSD1 FGFRL1 KCNH1 IFT122 GNA11 SHOC2 HCCS TERT ATR COL11A2 ITGA6 COL7A1 TTC7A NSDHL DSP SOX11 COL17A1 LAMC2 SMARCD2 ZSWIM6 EVC ACVRL1 TELO2 ROR2 COL17A1 FGFR1 GJA1 SHANK3 NECTIN1 HRAS GJA1 SLC25A22 RNF113A TFAP2A KCNH1 ROR2 PLEC PIGQ SRCAP PLEC KRT6B IFT43 KRT16 KCNH1 DOCK6 PHYH GPC4 COL7A1 INSR CERS3 DVL1 ROR2 BRAF PLAGL1 LMNA DSP MCTP2 RSPO1 SOX11 KRT5 DLL4 CKAP2L ABCA12 FOXC2 RERE NFKB2 KDM1A MAPK1 COL17A1 ATP6V1B2 LAMB3 NOG UROD RBPJ GJB6 TAF1 EVC2 UBR1 MPLKIP DLX3 EXT2 NTNG1 ABCA12 MMP1 HYMAI VEGFC WNT7A FGFR2 TREX1 STAMBP ACTL6B ERCC2 WNT5A DSP TINF2 LMX1B MAF LMNA MBTPS2 GTF2IRD1 LETM1 KRT14 PIGV CTC1 HGD PORCN TGM1 ATP6V1B2 KRT5 RIPK4 RFC2 DMXL2 FLNB CSTB PLEC GJB2 RAB3GAP1 FLT4 GJA1 COL7A1 GPC4 KRT16 TSC1 COL17A1 ZMPSTE24 PPP2R5D LAMC2 DPF2 ALOX12B HFE CARD14 DSP NSD2 GDF5 DVL1 IRF6 STIM1 KRT9 ITGA6 LMNA PDE4D ATP2A2 CLIP2 KRT14 PNPLA1 KRT86 ACTG2 PIGP IRF6 NPR2 FOXN1 ERCC3 WNK1 ITGA3 GPC4 JUP WNT10A TRPV3 NOTCH1 COL7A1 COL7A1 DKC1 BCR GJC2 LAMC2 RETREG1 AKT1 STXBP1 DVL3 NECTIN1 CD151 TGM1 KDF1 SRY GJB4 CPLX1 NSUN2 COL7A1 TGM1 GJB3 TRRAP GNAO1 MMP1 LMNA DNAJC21 KIF22 COL7A1 ACD WRAP53 ABCA12 CARD14 EZH2 DPM1 GSN PEX6 TBC1D24 TERT SOX4 TARS1 TRPS1 ELN ZMPSTE24 SULT2B1 TERT SLC25A24 TRPV3 ANAPC1 FOXP3 RTEL1 ARID1A SMARCAD1 COL7A1 KCNA1 ABCA1 TCTN3 NTRK1 SMARCE1 RAB3GAP2 POLR3A CPT2 IL17RA SF3B1 EFNB1 CDKL5 NSD1 GJB2 TERC RECQL4 TET2 LORICRIN PIGN KRT5 NOG ITGB4 TGM1 NIPAL4 UMPS ARID2 RUNX2 LAMA3 IHH NEUROD2 NOG ZMPSTE24 KRT74 KRT83 CYB5R3 EVC PRKAR1A LRP4 ARX EDARADD LAMB3 FTO DOCK6 ATP6V0A2 CTC1 COL7A1 IFT122 EVC2 EVC2 KRT6A RECQL4 SLURP1 TNFRSF1B POLR3A COL7A1 SATB2 LIPN FLT4 GPC3 PGAP2 TP63 ITGB4 TNFRSF1B SDR9C7 PLEC ACD COL7A1 SLC35D1 SHANK3 COL7A1 RNU4ATAC PPP1CB ARID1A SMARCC2 KRT17 GPC4 IL17RC STXBP1 NOP10 PLEC ZBTB20 SETBP1 SMARCD1 WDR35 SLURP1 RPS6KA3 SCN9A TFAP2A FGF9 SLC39A4 INSR SLCO2A1 DLX5 COX7B B3GALT6 LAMA3 ABCA1 CYP4F22 GTF2H5 GLI3 DSG1 KRT14 INSR FZD2 ADAM17 EDA NOG DSG4 GJB2 NHP2 ITGB4 ARHGAP31 KRT81 FLNA KANK2 PKP1 ECE1 HOXA13 GJB6 UBE2A ADNP TSC2 TRAF6 BMP2 PEX6 HLA-C TBX3 GPR101 SCN2A KRT14 EOGT FERMT1 RAB7A RIPK4 RAB3GAP2 FIG4 GTF2E2 KRT5 CDH1 MACROH2A1 CASK SHOX NXN TP63 CD28 KCNH1 SMARCAD1 GJB2 CTSC IKBKG LAMA3 KRAS NIPAL4 MLXIPL CDKL5 AIP TAT TINF2 SMARCB1 ALOXE3 EED MECP2 SOX18 MBTPS2 CYB5A PIGN GABBR2 APC2 SLC25A24 MBTPS2 PIGA NFKB2 DLX3 LMX1B APC IKBKG RIPK4 SLC39A4 KRT14 UBE2A CTSC AP1S3 LAMB3 PTDSS1 LAMC2 IL11RA MAP2K1 KRT14 HUWE1 BAZ1B RTEL1 EVC2 GJB6 SMARCA4 BMPR1B FGFR2 KRT86 UBA1 COL7A1 CTLA4 TRIM8 ALOXE3 DYNC2LI1 TP63 NOTCH1 RSPO4 BHLHA9 ADAMTSL2 TSC2 KCTD1 TP63 PLOD3 ARX TRAF3IP2 DVL3 SOST DSP FAM111B DPF2 KRT85 ARID1B LBR KRT14 ITGB4 ALOXE3 NOTCH2 KDF1 COL7A1 NLRP1 KRT1 ENG LAMA3 SASH1 MSX1 LIG4 DSG1 TP63 WNT7A GTF2I EDARADD WDR19 IFNG LMX1B ALG3 BMPER PQBP1 IFT52 LRP4 HRAS RTEL1 LAMC2 MAP2K2 COL7A1 KCNN3 STXBP1 GDF5 LAMB3 KIF15 FOXN1 KRT83 CRKL ANTXR1 NPM1 ZBTB20 AIRE RETREG1 GRHL2 KRT5 TP63 GJB2 EZH2 PIGV PIGO KRT6A KIF1A TINF2 DKC1 DPH1 WNK1 IFT43 KRT1 PLCD1 RLIM PIGL PLCD1 GLI1 VEGFC CAST PRKD1 LMNA RNU4ATAC CSTA EBP COL7A1 EDAR KDM1A PITX1 ERCC2 IFIH1 TBC1D24 POP1 TERC NSD1 ORC1 NECTIN4 CD28 CASR POC1A DPH1 OFD1 CAMK2G ATP2A2 WASHC5 AAGAB COL11A1 KRT5 KRT17 CCDC22 COL14A1 PNKP BMP4 ALOX12B KIF11 CTSK MVK STING1 KRT5 TINF2 WNT5A FIG4 COL11A1 GLI3 TRPS1 DLL4 WHCR SMARCE1 KIF1A PARN EOGT TSC1 SIK1 WNT7A TBL2 WNT10A KDSR PEPD SUZ12 ATL1 DHX37 PIGW POMP ATP2A2 NOTCH2 GJA1 FERMT1 VAC14 FHL1 EVC NOP10 CTLA4 KCTD1 SCN9A MSX1 CDSN EFNB1 DST AP1B1 PERP ITGB4 NHP2 KRT16 LMNA COL2A1 CWC27 WNT10A PARN EDAR ZSWIM6 HPGD JUP TBX4 TP63 USB1 NDUFB11 ZMPSTE24 MBTPS2 FTL RIPK4 KRT6B CLEC7A PLEC EVC PGAP3 HOXC13 SETD2 KRT14 GJA1 IHH PEX1 SCN1B FLNB DKC1 EED TINF2 RPS6KA3 WDR73 GDF5 TP63 FUCA1 ACAN PEX1 ALOX12B PARN
Protein Mutations 1
N171K
SNP 0