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Report for Mutation E167K

Developed by Shray Alag, 2020.
SNP Clinical Trial Gene

There is one clinical trial.

Clinical Trials


1 Genetic Regulation of Lipid Pathways Contributing to Non-alcoholic Fatty Liver and Atherogenic Dyslipidemia

The aims of the study are: 1. To investigate if carriers of apolipoprotein (apo) CIII loss-of-function (LOF) mutations produce less apo-CIII that results in reduction of large very low-density lipoprotein (VLDL) particle secretion as compared to non-carriers of these variants and compare the results with carriers of apo-CIII gain-of-function (GOF) to elucidate the role of apo-CIII in hepatic lipid metabolism. 2. To study if carriers of the TM6SF2 E167K and PNLPLA3 I148M mutations produce less large VLDL particles to transport fat out of the liver as compared to non-carriers. 3. To test whether the specific mutations in the apo-CIII, TM6SF2 and PNLPLA3 genes are reflected in changes of liver de novo lipogenesis (DNL), liver fat, Homeostatic Model Assessment for Insulin Resistance (HOMA-IR), plasma lipid and apolipoprotein kinetics and fasting concentrations in carriers of the TM6SF2 E167K and PNLPLA3 I148M mutations as compared to non-carriers. 4. To study the effects of APOE, angiopoietin (ANGPTL3 and ANGPTL8) or endothelial lipase (LIPG) genotypes on liver fat metabolism, lipid and apolipoprotein metabolism and lipid phenotypes.

NCT04209816 Non-alcoholic Fatty Liver Atherogenic Dyslipidemia Insulin Resistance Diagnostic Test: Lipoprotein kinetics
MeSH:Fatty Liver Non-alcoholic Fatty Liver Disease Insulin Resistance Dyslipidemias
HPO:Abnormal circulating lipid concentration Hepatic steatosis Insulin resistance

2. To study if carriers of the TM6SF2 E167K and PNLPLA3 I148M mutations produce less large VLDL particles to transport fat out of the liver as compared to non-carriers. --- E167K ---

3. To test whether the specific mutations in the apo-CIII, TM6SF2 and PNLPLA3 genes are reflected in changes of liver de novo lipogenesis (DNL), liver fat, Homeostatic Model Assessment for Insulin Resistance (HOMA-IR), plasma lipid and apolipoprotein kinetics and fasting concentrations in carriers of the TM6SF2 E167K and PNLPLA3 I148M mutations as compared to non-carriers. --- E167K ---

Inclusion Criteria: - persons who have provided written consent - apo-CIII loss-of-function mutation (heterozygous) or apo-CIII gain-of-function mutations (heterozygous) or TM6SF2 E167K mutation (homozygous) or PNLPLA3 I148M or apoE or LIPG or ANGPTL3 or ANGPTL8 LOF and GOF variants. --- E167K ---

m² at inclusion Exclusion Criteria: - Patients with Type 1 and 2 diabetes, BMI > 40 kg/m2, - ApoE2/2 phenotype, thyrotropin concentration outside normal range, - Lipid-lowering drugs - Blood pressure >160 mmHg systolic and/or > 105 diastolic mmHg - Liver failure or abnormal liver function tests >3 x upper limit of normal - Intestinal disease - Pregnancy, breastfeeding - Patients with volume depletion Inclusion Criteria: - persons who have provided written consent - apo-CIII loss-of-function mutation (heterozygous) or apo-CIII gain-of-function mutations (heterozygous) or TM6SF2 E167K mutation (homozygous) or PNLPLA3 I148M or apoE or LIPG or ANGPTL3 or ANGPTL8 LOF and GOF variants. --- E167K ---

Primary Outcomes

Description: Production rate, mg/day

Measure: Difference in the rate of production of VLDL Apo B

Time: Baseline

Description: Production rate, mg/kg/day

Measure: Difference in the rate of production of VLDL Triglycerides

Time: Baseline

Description: Production rate, mg/kg/day

Measure: Difference in the rate of production of VLDL ApoC-III and apoE

Time: Baseline

Description: Rate of disappearance, pools/day

Measure: Difference in the Fractional Catabolic Rate of VLDL Apo B

Time: Baseline

Description: Rate of disappearance, pools/day

Measure: Difference in the Fractional Catabolic Rate of VLDL Triglycerides

Time: Baseline

Description: Rate of disappearance, pools/day

Measure: Difference in the Fractional Catabolic Rate of VLDL ApoC-III and apoE

Time: Baseline

Description: Measure of newly synthesized triglycerides in VLDL, μmol/l

Measure: Difference in de novo lipogenesis

Time: Baseline

Description: Percentage of liver fat measured with magnetic resonance spectroscopy

Measure: Difference in liver fat

Time: Baseline

Description: Remnant lipoproteins and lipoprotein fraction composition, mg/L

Measure: Difference in atherogenic dyslipidemia

Time: Baseline

Description: Calculated Homeostatic Model Assessment for Insulin Resistance (HOMA-IR)

Measure: Difference in insulin resistance

Time: Baseline

Description: ApoA, mg/dl

Measure: Difference in apoprotein A concentration

Time: Baseline

Description: ApoB, mg/dl

Measure: Difference in apoprotein B concentration

Time: Baseline

Description: ApoC, mg/dl

Measure: Difference in apoprotein C concentration

Time: Baseline

Description: ApoE, mg/dl

Measure: Difference in apoprotein E concentration

Time: Baseline

Description: Rate of turnover, pools/day

Measure: Difference in the rate of production and Fractional Catabolic Rate of intermediate-density Apo B

Time: Baseline

Description: Rate of turnover, pools/day

Measure: Difference in the rate of production and Fractional Catabolic Rate of low-density lipoprotein Apo B

Time: Baseline

Description: Measured lipoprotein lipase activity, mU/ml

Measure: Lipolytic activity

Time: Baseline

Description: Measured hepatic lipase activity, mU/ml

Measure: Hepatic lipase activity

Time: Baseline


HPO Nodes


HP:0003119: Abnormal circulating lipid concentration
Genes 290
PLIN1 DHCR7 LIMK1 KCNJ1 PIGH PHKA2 PEX19 SLC25A13 ADCY3 SLC22A5 NGLY1 LTC4S TRNE ALB PPARG ELN LCAT ALMS1 NADK2 PCSK9 LMNA TDP1 APOE LIPE ABCA1 RAI1 APOC3 SYNE2 SLC29A3 PHYH CAV1 CAV3 LMNA PANK2 TBCK HADH PEX26 GLA PNLIP APOB NSDHL BSCL2 AEBP1 LMNA PHKG2 CETP PLA2G4A TRNE UBE3B CFH LMNA PIK3R5 LRP6 PEX7 LIPE SMPD1 TRNK ABCD1 PEX3 ALB ABCG8 AGL RAI1 SYNE1 SLC37A4 CYP19A1 XRCC4 BSCL2 NPC2 HSD3B7 LMNB2 LMAN1 CIDEC AGL GYS2 LMNA CYP11A1 FBN1 HMGCL ABCA1 KCNJ11 ACADVL GPD1 HAVCR2 CYP27A1 PEX12 NUP107 PLIN1 SMPD1 STX11 CYP7A1 ABCG8 ACADL LMNA NADK2 TRMU ABCC8 RSPO1 PEX1 PEX13 DGAT1 FLCN APOA5 SLC25A20 PSMB8 LDLR PNPLA2 CYP11A1 APOC2 APTX NPHS2 MC4R PPP1R17 IQSEC2 BAZ1B PCSK9 UBR1 LDLRAP1 FOS ABHD5 GK APOB RAI1 TNPO3 MYO5A APOA5 MTTP GHR DCAF17 OCRL PPARG EBP UNC13D PEX2 DCAF17 AGPAT2 EBP SLC52A1 SLC25A13 PEX1 ABCA1 PMM2 GTF2IRD1 PEX16 PPARG CAVIN1 PEX11B PYGL NPC1 GPIHBP1 LBR TANGO2 PEX5 JAG1 CAV1 SPIB PRF1 RFC2 BSCL2 LDLR PSMB9 TMEM199 LPL CPT1A PEX12 SC5D SGPL1 HNF1A SAR1B GTF2I EMD PEX2 OCRL ZMPSTE24 PIGT XRCC4 TMEM43 LMNA XIAP DEAF1 DHCR7 PEX5 LMNA MEF2A CLIP2 MSMO1 NPHS1 PEX6 SLC37A4 LDLRAP1 G6PC STXBP2 POU2AF1 RAB27A AKT2 APOC3 PEX5 GHR DMPK TTPA UCP2 SLC25A13 LEP HNF4A PEX19 SLC25A13 LMNA CFHR1 ABCG5 LMNA ACADM LIPC LMNA IL12A LCAT CCDC115 FLII LPL CYP27A1 LEPR ALMS1 CIDEC TRNL1 PLVAP ABCA2 PHKG2 ANGPTL3 ACOX2 NUP107 LCAT IL12RB1 PEX10 TBL2 POLD1 FHL1 HMBS PEX14 TANGO2 ACAD8 DHCR24 DLD ABCA1 CEP19 CAV1 ACADVL POLR3A CPT2 CCT5 SLC12A1 PEX7 CPT1A MMEL1 AGPAT2 PSMB4 PLA2G7 AR APOA2 COG4 LIPA PHKA2 PYGL IRF5 ACAD9 APOA1 SLC7A7 CAVIN1 BSCL2 TFG CTNS ZMPSTE24 CETP SAR1B ZMPSTE24 ACAD8 TDP1 APOB PEX10 TNFSF15 ACTN4 PNPLA2 DYRK1B NSMCE2 POLR3A MCFD2 FECH ACADM CFHR3 LIPA SETX EPHX2