SNPMiner Trials by Shray Alag

rs12979860 (38) rs6971 (31) rs9939609 (11) rs6265 (11) rs738409 (11) rs7903146 (8) rs4680 (8) rs8099917 (8) rs11200638 (6) rs429358 (6) rs10490924 (6) rs7412 (6) rs16969968 (5) rs25531 (5) rs1801133 (5) rs1800497 (5) rs1799971 (4) rs4244285 (4) rs2832407 (4) rs1045642 (4) rs1544410 (4) rs10033464 (3) rs1761667 (3) rs6166 (3) rs1042713 (3) rs2023239 (3) rs1051730 (3) rs174537 (3) rs1006737 (3) rs2230199 (3) rs1128503 (3) rs2231142 (3) rs10455872 (3) rs6313 (3) rs1061170 (3) rs776746 (3) rs4588 (3) rs2069514 (2) rs1799963 (2) rs9332739 (2) rs2032582 (2) rs3745274 (2) rs6295 (2) rs12936231 (2) rs6280 (2) rs7103572 (2) rs35599367 (2) rs13266634 (2) rs1410996 (2) rs6025 (2) rs4129267 (2) rs70991108 (2) rs174547 (2) rs1127354 (2) rs362331 (2) rs53576 (2) rs35705950 (2) rs641153 (2) rs1695 (2) rs2234246 (2) rs10741657 (2) rs1800955 (2) rs2106261 (2) rs4149056 (2) rs2234237 (2) rs362307 (2) rs3808607 (2) rs1828591 (2) rs1800470 (2) rs1024611 (2) rs12785878 (2) rs3751143 (2) rs762551 (2) 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rs1786378374 (1) rs13376333 (1) rs17070145 (1) rs17561 (1) rs34489327 (1) rs7571842 (1) rs11133360 (1) rs2235321 (1) rs678849 (1) rs8069645 (1) rs35059413 (1) rs6454674 (1) rs2853884 (1) rs737865 (1) rs183489969 (1) rs7333181 (1) rs1143623 (1) rs71647871 (1) rs4149032 (1) rs17037122 (1) rs1062613 (1) rs2516513 (1) rs1048661 (1) rs11126727 (1) rs11568821 (1) rs1049524 (1) rs11568820 (1) rs1049522 (1) rs172378 (1) rs10994133 (1) rs924607 (1) rs2488457 (1) rs1143633 (1) rs11039155 (1) rs1143634 (1) rs2464266 (1) rs396991 (1) rs562696473 (1) rs11126731 (1) rs8105790 (1) rs10509681 (1) rs12041331 (1) rs1805010 (1) rs6013897 (1) rs16139 (1) rs2234693 (1) rs35652124 (1) rs4693608 (1) rs961360700 (1) rs2305948 (1) rs4343 (1) rs5743844 (1) rs4883263 (1) rs10033900 (1) rs4883264 (1) rs2243250 (1) rs2241193 (1) rs17614942 (1) rs2383206 (1) rs1800592 (1) rs613872 (1) rs4803217 (1) rs11031006 (1) rs1047768 (1) rs12208357 (1) rs4488809 (1) rs1800588 (1) rs2227902 (1) rs1549339 (1) rs3184504 (1) rs2248949 (1) rs222797 (1) rs1643649 (1) rs4803455 (1) rs2853564 (1) rs780094 (1) rs2231137 (1) rs6434222 (1) rs3825942 (1) rs112735431 (1) rs751402 (1) rs9701796 (1) rs1202167 (1) rs1202168 (1) rs1202169 (1) rs12472215 (1) rs4311 (1) rs2279238 (1) rs3766404 (1) rs7349683 (1) rs3781727 (1) rs1800450 (1) rs7157609 (1) rs529802001 (1) rs2257401 (1) rs3817198 (1) rs1217414 (1) rs1045485 (1) rs2278392 (1) rs2476601 (1) rs7993418 (1) rs13181 (1) rs4673 (1) rs2097432 (1) rs324011 (1) rs1079598 (1) rs1800566 (1) rs1800682 (1) rs603965 (1) rs993607 (1) rs1790349 (1) rs1044396 (1) rs3742376 (1) rs6592052 (1) rs9332377 (1) rs16111115 (1) rs11559024 (1) rs1149222 (1) rs11870474 (1) rs25331 (1) rs2929116 (1) rs2929115 (1) rs7961953 (1) rs2242480 (1) rs4532 (1) rs222747 (1) rs105173 (1) rs2165241 (1) rs1800795 (1) rs2075606 (1) rs11648486 (1) rs35874116rs (1) rs4795541 (1) rs2282679 (1) rs7853758 (1) rs1504982 (1) rs1176713 (1) rs11249433 (1) rs12467815 (1) rs10524523 (1) rs4880 (1) rs12760457 (1) rs2062305 (1) rs3828057 (1) rs3790515 (1) rs11687951 (1) rs1800896 (1) rs254093 (1) rs4994 (1) rs4633 (1) rs1885988 (1) rs11099592 (1) rs6843082 (1) rs17611 (1) rs2228171 (1) rs1042173 (1) rs41432149 (1) rs926198 (1) rs12992677 (1) rs2305619 (1) rs1800888 (1) rs61729512 (1) rs2266782 (1) rs1653624 (1) rs664393 (1) rs2246704 (1) rs11959427 (1) rs4848306 (1) rs3765467 (1) rs2246709 (1) rs2089760 (1) rs2180439 (1) rs2242447 (1) rs2981582 (1) rs12654788 (1) rs5275 (1) rs1053230 (1) rs1906591 (1) rs2010963 (1) rs11102930 (1) rs2601126 (1) rs2854116 (1) rs2854117 (1) rs16944 (1) rs17778257 (1) rs16942 (1) rs1801282 (1) rs5751876 (1) rs762251 (1) rs3803662 (1) rs10264272 (1) rs28399433 (1) rs230561 (1) rs12654778 (1) rs4364254 (1) rs10177833 (1) rs2238071 (1) rs1801275 (1) rs10766197 (1) rs704010 (1) rs10937405 (1) rs2228480 (1) rs9526240 (1) rs17570669 (1) rs10407022 (1) rs4612666 (1) rs6746030 (1) rs889312 (1) rs243866 (1) rs2740565 (1) rs1558902 (1) rs8192620 (1) rs10865801 (1) rs58542926 (1) rs3789604 (1) rs1801260 (1) rs2273773 (1) rs10757274 (1) rs573112 (1) rs2244613 (1) rs10757278 (1) rs6330 (1) rs1056892 (1) rs11931074 (1) rs2075252 (1) rs1297860 (1) rs28459296 (1) rs2380205 (1) rs780094s (1) rs9557195 (1) rs11045585 (1) rs1801253 (1) rs1801132 (1) rs11569562 (1) rs2104772 (1) rs15524 (1) rs2854275 (1) rs2066842 (1) rs12255372 (1) rs6323 (1) rs1057910 (1) rs1051375 (1) rs544684689 (1) rs2234237r25r (1) rs6318 (1) rs9826 (1) rs7120118 (1) rs12356193 (1) rs8111699 (1) rs7270101 (1) rs17042171 (1) rs1062033 (1) rs553668 (1) rs185670819 (1) rs1405655 (1) rs6311 (1) rs518147 (1) rs10401969 (1) rs4516035 (1) rs33996649 (1) rs10276036 (1) rs1465952 (1) rs2232618 (1) rs549927573 (1) rs41308230 (1) rs2293152 (1) rs2237060 (1) rs5215 (1) rs4820059 (1) rs12329760 (1) rs12676 (1) rs11083519 (1) rs16874954 (1) rs35597368 (1) rs1799983 (1) rs5573 (1) rs2229774 (1) rs2731886 (1) rs5574 (1) rs2302616 (1) rs12221497 (1) rs4973768 (1) rs5569 (1) rs2032892 (1) rs13281615 (1) rs4820268 (1) rs10079250 (1) rs1799750 (1) rs9366637 (1) rs4148738 (1) rs10456542 (1) rs25648 (1) rs9984723 (1) rs766996587 (1) rs2398162 (1) rs7291050 (1) rs1011970 (1) rs4253728 (1) rs12143842 (1)

SNPMiner SNPMiner Trials (Home Page)


Report for SNP rs165599

Developed by Shray Alag, 2020-2021.
SNP Clinical Trial Gene

There are 2 clinical trials

Clinical Trials


1 Genetic Association Study Between Single Nucleotide Polymorphisms (SNPs) and Cognitive Performance in Young Bipolar Type I Patients: LICAVALGENE

This is a genetic association study of cognitive impairment in young bipolar disease type I patients without medications in mania, depression, hypomania or mixed states.

NCT00969930
Conditions
  1. Bipolar

Methods: 80 patients with BD type I (SCID DSM-IV), age from 18 to 35 years old, currently on mania, depression, hypomania or mixed state after medication wash out will be submitted to complete neuropsychological evaluation and genotyped for COMT (val158met, rs165599, -287, rs737865), ApoE (epsilon 4) and BDNF (val66met)and 80 healthy controls.

Primary Outcomes

Measure: Cognitive deficits in BD patients are associated with COMT, ApoE and BDNF polymorphisms

Time: 18 months

2 Interventional Study of Expiratory Muscle Strength Training as a Treatment in Neuromuscular Disorders

The purpose of this study is to investigate the impact of expiratory muscle strength training (EMST) on the swallowing, breathing, oral intake, quality of life and cough function of people with oculopharyngeal muscular dystrophy (OPMD).

NCT04009408
Conditions
  1. Oculopharyngeal Muscular Dystrophy
  2. Muscular Dystrophies
  3. Myopathy; Hereditary
Interventions
  1. Device: Expiratory muscle strength therapy (EMST150, Aspire LLC)
MeSH:Muscular Dystrophies Muscular Diseases Muscular Dystrophy, Oculopharyngeal Neuromuscular Diseases
HPO:Muscular dystrophy Myopathy

We will measure genetic biomarkers associated with swallowing function including rs6265, rs165599, rs10835211, rs17601696, and APOE4 genotype status.

Primary Outcomes

Description: Global swallowing function is rated from videofluoroscopy swallowing studies (VFSS), using the Dynamic Imaging Grade of Swallowing Toxicity (DIGEST), a validated 5-point scale. Global swallowing function is rated from 0-4: 0 = no pharyngeal dysphagia; 1 = mild; 2 = moderate; 3 = severe; 4 = life-threatening. A lower score is a better outcome.

Measure: Global Swallowing Function

Time: Change in score from week 0 to week 5

Secondary Outcomes

Description: Global swallowing function is rated from videofluoroscopy swallowing studies (VFSS), using the Dynamic Imaging Grade of Swallowing Toxicity (DIGEST), a validated 5-point scale. Global swallowing function is rated from 0-4: 0 = no pharyngeal dysphagia; 1 = mild; 2 = moderate; 3 = severe; 4 = life-threatening.

Measure: Global Swallowing Function

Time: Change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: MEP is a measure of respiratory muscle strength and is assessed with a handheld manometer, measured in centimetres of water (cmH2O). A higher score is a better outcome.

Measure: Maximum expiratory pressure (MEP)

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: Measure of cough strength that is assessed using a spirometer, measured in litres per minute (L/min). A higher score is a better outcome.

Measure: Volitional cough strength (peak cough flow)

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: Measure of how much air is exhaled during forced exhalation and is assessed with a spirometer, measured in litres. A higher score is a better outcome.

Measure: Forced vital capacity (FVC)

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: A measure daily nutritional and hydration consumption. Oral intake is assessed using the Functional Oral Intake Scale (FOIS), a validated 7-point ordinal scale (1 = no oral intake; 2 = tube dependent with minimal/inconsistent oral intake; 3 = tube supplements with consistent oral intake; 4 = total oral intake in single consistency; 5 = total oral intake of multiple consistencies requiring special preparation; 6 = total oral intake with no special preparation, but must avoid specific foods or liquid items; 7 = total oral intake with no restrictions). A higher score is a better outcome.

Measure: Oral Intake

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: Will be measured using the Eating Assessment Tool-10 (EAT-10), a self-administered, symptom-specific outcome instrument for dysphagia. The EAT-10 allows patients to rate their swallowing symptoms on scale of 0 = no problem to 4 = severe problem. A lower score is a better outcome.

Measure: Self-perceived swallowing impairment

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: An optional blood sample will be collected for biomarker analysis, to identify correlations with clinical response. We will measure genetic biomarkers associated with swallowing function including rs6265, rs165599, rs10835211, rs17601696, and APOE4 genotype status. For these 5 genetic biomarkers, participants will be scored as having zero, one, or two alleles. This information will be used in subgroup analyses for the primary and secondary outcomes.

Measure: Biomarker analyses

Time: Baseline measurement (week 0)


HPO Nodes


HP:0003198: Myopathy
Genes 485
TRNH CHRNA1 PGAM2 NODAL ND6 CSRP3 TRNL1 HSPG2 ACTN2 BAG3 PSEN1 ACADS TRNK NDUFAF4 GTF2IRD1 TRNC NEB HNRNPA2B1 PUS1 SLC25A4 FGFR1 COL6A2 FKRP TRNS2 SHH SDHD STIM1 TRNP AKT1 ALG14 CACNA1S ND1 HADHA RYR1 NEB TMEM43 FKTN ACTA1 TRIM32 SYNE1 LARGE1 PLOD1 POMT2 PLEC DLL1 COL6A1 DOK7 COX3 CLIP2 SCN4A TAZ CHRND RAF1 LAMB2 TRNT B3GALNT2 TKFC CRYAB EMD COX1 MUSK ELN DSG2 PTEN MYH7 POLG TCAP ND4L VCP CFL2 CHRNA1 ND2 KLHL41 MYH2 TRIM32 COL9A1 BIN1 ND6 CHKB COLQ TPM2 RNR1 KLHL41 SQSTM1 TRIP4 ATP6 SDHAF1 MYH6 TXNRD2 TRNL1 MYOT TRNW NEB SUFU ABHD5 TPM2 TRNF TDGF1 GK CYTB CHRNE SELENON AK9 ACTA1 GNE TRNW TNPO3 MYBPC3 SLC5A7 CHRNB1 MYF6 FKTN COL13A1 AGL CHST14 RMND1 TRNL1 TRMU ND5 MAP3K20 SIL1 FKTN VMA21 GFER CHRNE SLC25A4 COL6A2 DNA2 DNAJB6 PRKAR1A CHRNB1 MYOT CAP2 VPS13A XK TTN TRNS1 TRNH ORAI1 COX1 TNNT1 ADGRG6 COMP PDE8B LMNA ND4L DES DNM1L RYR1 FHL1 CASQ1 USP8 COL12A1 ND1 NEFH LMNA ND4 ND5 LAMA4 LDB3 COL12A1 TRNF LMOD3 SIL1 SLC25A4 PANK2 TTN MTAP PPARG COL6A3 TRNQ PGK1 CFL2 RYR1 TRNS1 BSCL2 UNC80 GK RET TPM3 TRNQ FLAD1 HNRNPA2B1 TRAPPC11 VAMP1 STIM1 ISCU MSTO1 CYTB FKBP14 GMPPB DPM3 HADHB DES SLC22A5 HACD1 MYBPC3 NEXN STIM1 SELENON TRNK TAZ TNNT2 CAV3 TRNF LMNA CHRND SCN4A VCP B4GALT1 FGF8 SCN4A ND1 TNNT1 SCN4A SCN4A LAMP2 TRNS2 CDON FKRP GIPC1 RBM20 SGCB LMNA FOXH1 GATAD1 DNM2 GMPPB MYH7 TIA1 DYSF TTN TNNC1 ABHD5 GAS1 MYPN RYR1 MAN2B1 TPM3 MGME1 ANO5 EPG5 TNNI3 TBCE B4GALT1 AGRN SQSTM1 COL9A2 ATP6 ANKRD1 SYNE2 DISP1 TTN CACNA1S TRNP POLG2 POLG ACTA1 SAR1B TPM2 SLC18A3 DSE ND5 DNM2 TRNI ERGIC1 MYOT MYMK ZIC2 CRYAB KLHL40 VAMP1 CAPN3 MYH7 SCN5A NUBPL NDUFA11 TRNE MYBPC1 FKBP14 ACTA1 TTN CDH23 RAPSN CHRND OPA1 CRYAB ND2 PDE11A LMNB2 CPT2 POMT1 SGCG MYOD1 POMT1 ACTA1 TBL2 ZBTB20 PLEC FKTN INPP5K CYTB CTNS TRNF PNPLA2 TTN PLN RFC2 NDUFS2 GYG1 SDHB TPI1 KLHL41 ND4 RRM2B LMNA LIMK1 FLNC MYO18B NEB TPM3 SDHA TWNK NDUFAF1 GCLC CASQ1 POMGNT1 UBA1 SGCD ACTC1 TMPO ND6 FHL1 HAND2 TGIF1 TK2 ALDOA TPM3 MYOT FLNC ND1 MYH14 COL6A1 OPA1 MTMR14 TRNQ FKRP CISD2 ITGA7 PRDM16 AGL POLG CHRNB1 PRKAG2 MYPN TK2 ITGA7 TAF1A TK2 PPCS COLQ COX2 CCDC174 HADHA CHRNE ND6 CHRNB1 COX3 AGK ACAD9 ACTA1 GFPT1 RERE POLG HADHB MTTP TPM1 GNE XDH TRNE SKI LARGE1 ALG2 MYH7 RRM2B ALPL SCN4A SDHD GLI2 BAG3 CHAT SLC25A1 ANO5 YARS2 FHL2 TIA1 GABRD ACTA1 LMNA PNPLA2 TRNS2 PTCH1 COX3 LRP4 SGCA C1QBP PTEN KBTBD13 ACACA DHX16 DPAGT1 TRNK GTF2I MYH7 TWNK MYH7 MYO9A ACADM TRNV RYR1 POMT1 COL13A1 PSEN2 COX2 COL6A3 TRAPPC11 CAV3 ATP6 TTN EMD VCL SIX3 ND5 ND4 COL9A3 CENPF VCP PRKACA TRNL1 DOLK HNRNPA1 KLHL9 AGRN PGK1 SLC25A3 MYL2 NEB MYMK PABPN1 ND5 SYT2 MTMR14 COX1 AP1S2 KBTBD13 FXR1 PRDM16 NARS2 AGK FXR1 ORAI1 LRP12 BIN1 WFS1 SNAP25 STIM1 ABCC9 BAZ1B CRPPA ADSS1 TANGO2 HNRNPA1 NDUFB3 COX3 NEBL GCLC LDB3 DYSF DMD KCNAB2 SELENON HNRNPDL TRNS1 NALCN SDHA
Protein Mutations 0