SNPMiner Trials by Shray Alag


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Report for Clinical Trial NCT02564484

Developed by Shray Alag, 2020.
SNP Clinical Trial Gene

Collection of PBMC's From Patients With Unusually Severe Vincristine-Induced Neuropathy for the Creation of Neuronal-Like Cells

This observational study is designed to establish induced pluripotent stem cells (iPSCs) from childhood cancer survivors who did or did not develop persistent treatment-induced peripheral neuropathy, from which to make human neurons for comparing their sensitivity to vincristine and other potentially neurotoxic drugs. Investigators will assess the effects of inherited genome variations on treatment-induced peripheral neuropathy that persists in adults who were cured of childhood cancer. Cells from childhood cancer survivors who did or did not develop drug-induced neuropathy will be isolated and induced to become neurons. Cell sensitivity to anticancer agents will be tested in both groups and compared to determine if the survivors have genetic variants that correspond to those identified in companion genomic studies. This will assist in determining if gene variants increase the risk of treatment-induced neurotoxicity. The investigators are interested in detecting changes of phenotype pre-post treatment in each group (cases, controls) respectively, as well in comparing the pre-post treatment phenotypic changes between the two groups (cases vs. controls).

NCT02564484 Leukemia Lymphoma


Primary Outcomes

Description: Blood will be drawn on Day 1, processed and sent to the University of Chicago for infectious diseases testing and creation of PBMCs for eventual development of iPS cells.

Measure: Number of participants for whom iPSCs were created

Time: Up to 6 months after participant enrollment

Secondary Outcomes

Description: Cell phenotypes of the iPSC neurons made from each patient (case or control) will be observed before and after treatment of neurotoxic drugs, giving for each drug a pair of observations from a patient.

Measure: Phenotype differences

Time: Up to 6 months after participant enrollment

Time Perspective: Prospective

Case-Control


There is one SNP

SNPs


1 rs924607

Cell phenotypes of the iPSC neurons made from each patient (case or control) will be observed before and after treatment of neurotoxic drugs, giving for each drug a pair of observations from a patient.. Inclusion Criteria - Neuropathy Patients: - Adult survivor of childhood ALL - Presence of any neuromotor, neurocortical, or neurocerebellar toxicity after vincristine treatment (either acute and/or persistent neuropathy) - At least 50% of the persistent vincristine neuropathy cases will have the CEP72 promoter variant (rs924607) or a coding variant in CEP72 that is predicted to be damaging (CADD score >9).

- At least 50% of the controls will have the CEP72 promoter variant T/T genotype (at rs924607) or a coding variant in CEP72 that is predicted to be damaging (CADD score >9).

Carboplatin therapy is allowed - Presence of peripheral neuropathy prior to vincristine therapy - Poorly controlled or insulin-dependent diabetes or other condition likely to predispose to neurotoxicity - Pregnant females - Currently receiving treatment for cancer Inclusion Criteria - Neuropathy Patients: - Adult survivor of childhood ALL - Presence of any neuromotor, neurocortical, or neurocerebellar toxicity after vincristine treatment (either acute and/or persistent neuropathy) - At least 50% of the persistent vincristine neuropathy cases will have the CEP72 promoter variant (rs924607) or a coding variant in CEP72 that is predicted to be damaging (CADD score >9).



HPO Nodes